removeIgraphSinglets: Remove igraph singlet nodes

In jmw86069/multienrichjam: Analysis and Visualization of Multiple Gene Set Enrichments

Remove igraph singlet nodes

Description

Remove igraph singlet nodes

Usage

removeIgraphSinglets(g, min_degree = 1, ...)

Arguments

g	igraph object
min_degree	numeric threshold with the minimum number of connections, also known as the "degree", required for each node.
...	additional arguments are ignored.

Details

This function is a lightweight method to remove igraph nodes with no connections. In fact, the min_degree can be used to require a minimum number of connections, but the intended use is to remove the singlet nodes that have no connections.

See Also

Other jam igraph functions: cnet2df(), cnet2im(), cnetplotJam(), cnetplot_internalJam(), color_edges_by_nodegroups(), color_edges_by_nodes_deprecated(), color_edges_by_nodes(), color_nodes_by_nodegroups(), communities2nodegroups(), drawEllipse(), edge_bundle_bipartite(), edge_bundle_nodegroups(), enrichMapJam(), fixSetLabels(), flip_edges(), get_bipartite_nodeset(), igraph2pieGraph(), jam_igraph(), jam_plot_igraph(), label_communities(), layout_with_qfrf(), layout_with_qfr(), mem2emap(), memIM2cnet(), mem_multienrichplot(), nodegroups2communities(), rectifyPiegraph(), relayout_with_qfr(), removeIgraphBlanks(), reorderIgraphNodes(), rotate_igraph_layout(), spread_igraph_labels(), subgraph_jam(), subsetCnetIgraph(), subset_igraph_components(), sync_igraph_communities(), with_qfr()

jmw86069/multienrichjam documentation built on Nov. 3, 2024, 10:29 p.m.