API for joelewis101/blantyreESBL
Data and Code Repository For a Study Describing Antimicrobial Resistance in Blantyre, Malawi
| Global functions | |
|---|---|
| btESBL_AST | Man page |
| btESBL_CARD_qrdr_mutations | Man page |
| btESBL_NCBI_phenotypic_bl | Man page |
| btESBL_amrgenes | Man page |
| btESBL_contigclusters | Man page |
| btESBL_contigclusters_msa_alignments | Man page |
| btESBL_contigclusters_msa_blastoutput | Man page |
| btESBL_contigclusters_msa_paf_files | Man page |
| btESBL_contigclusters_sensax | Man page |
| btESBL_coregene_tree_esco | Man page |
| btESBL_coregene_tree_kleb | Man page |
| btESBL_ecoli_global_popPUNK_clusters | Man page |
| btESBL_ecoli_globalst131_tree | Man page |
| btESBL_ecoli_globalst167_tree | Man page |
| btESBL_ecoli_globalst410_tree | Man page |
| btESBL_ecoli_globaltree | Man page |
| btESBL_ecoli_horesh_metadata | Man page |
| btESBL_ecoli_musicha_metadata | Man page |
| btESBL_ecoli_st131_amr | Man page |
| btESBL_ecoli_st131_metadata | Man page |
| btESBL_ecoli_st131_plasmids | Man page |
| btESBL_ecoli_st167_amr | Man page |
| btESBL_ecoli_st167_metadata | Man page |
| btESBL_ecoli_st167_plasmids | Man page |
| btESBL_ecoli_st410_amr | Man page |
| btESBL_ecoli_st410_metadata | Man page |
| btESBL_ecoli_st410_plasmids | Man page |
| btESBL_exposures | Man page |
| btESBL_kleb_global_metadata | Man page |
| btESBL_kleb_globaltree | Man page |
| btESBL_kleb_malawi_allisolate_core_gene_tree | Man page |
| btESBL_model1posterior | Man page |
| btESBL_model2posterior | Man page |
| btESBL_model2simulations | Man page |
| btESBL_model2simulations_2 | Man page |
| btESBL_model3posterior | Man page |
| btESBL_modeldata | Man page |
| btESBL_participants | Man page |
| btESBL_plasmidreplicons | Man page |
| btESBL_qrdr_mutations | Man page |
| btESBL_sequence_sample_metadata | Man page |
| btESBL_snpdists_esco | Man page |
| btESBL_snpdists_kleb | Man page |
| btESBL_stanmodeldata | Man page |
| btESBL_stoolESBL | Man page |
| btESBL_stoolorgs | Man page |
