btESBL_amrgenes: Data: AMR genes identified in sequenced isolates (excluding...
In joelewis101/blantyreESBL: Data and Code Repository For a Study Describing Antimicrobial Resistance in Blantyre, Malawi
btESBL_amrgenes R Documentation
Data: AMR genes identified in sequenced isolates (excluding QRDR mutations)
Description
Identified AMR genes using ARIBA and the SRST database.
See manuscript for details
Usage
btESBL_amrgenes
Format
A tidy data frame with 10822 rows and 3 variables:
- lane
Unique sample-sequencing run ID
- ref_seq
Identified AMR gene sequence
- genus
Genus of sample (E. coli or K. pneumioniae complex)
joelewis101/blantyreESBL documentation built on Nov. 1, 2023, 1:43 p.m.
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| btESBL_amrgenes | R Documentation |
Data: AMR genes identified in sequenced isolates (excluding QRDR mutations)
Description
Identified AMR genes using ARIBA and the SRST database. See manuscript for details
Usage
btESBL_amrgenes
Format
A tidy data frame with 10822 rows and 3 variables:
- lane
Unique sample-sequencing run ID
- ref_seq
Identified AMR gene sequence
- genus
Genus of sample (E. coli or K. pneumioniae complex)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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