btESBL_ecoli_st167_metadata: Data: metadata of global E. coli ST167 isolates
In joelewis101/blantyreESBL: Data and Code Repository For a Study Describing Antimicrobial Resistance in Blantyre, Malawi
btESBL_ecoli_st167_metadata R Documentation
Data: metadata of global E. coli ST167 isolates
Description
Metadata of a collection of 108 E. coli ST167 genomes
Patino-Navarrete et al 2020 (doi:10.1186/s13073-019-0699-6)
Usage
btESBL_ecoli_st167_metadata
Format
A dataframe with 167 rows and 13 variables
- accession
Sample accession
- Uberstrain
Uberstrain as defined by Enterobase
- Name
Sample ID
- platform
Sequencing platform
- library
library as defined by Enterobase
- insert_size
insert size
- Experiment
Experiment accession number
- Source Niche
Source niche as defined by Enterobase e.g. human , animal
- Source Details
Source details as defined by Enterobase e.g. species
- Country
Country of sample collection
- Collection Year
Year of sample colllection
- ST
Multilocus sequence type
joelewis101/blantyreESBL documentation built on Nov. 1, 2023, 1:43 p.m.
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| btESBL_ecoli_st167_metadata | R Documentation |
Data: metadata of global E. coli ST167 isolates
Description
Metadata of a collection of 108 E. coli ST167 genomes Patino-Navarrete et al 2020 (doi:10.1186/s13073-019-0699-6)
Usage
btESBL_ecoli_st167_metadata
Format
A dataframe with 167 rows and 13 variables
- accession
Sample accession
- Uberstrain
Uberstrain as defined by Enterobase
- Name
Sample ID
- platform
Sequencing platform
- library
library as defined by Enterobase
- insert_size
insert size
- Experiment
Experiment accession number
- Source Niche
Source niche as defined by Enterobase e.g. human , animal
- Source Details
Source details as defined by Enterobase e.g. species
- Country
Country of sample collection
- Collection Year
Year of sample colllection
- ST
Multilocus sequence type
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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