btESBL_contigclusters_msa_alignments: Data: Contig cluster multiple sequence alignments as...
In joelewis101/blantyreESBL: Data and Code Repository For a Study Describing Antimicrobial Resistance in Blantyre, Malawi
btESBL_contigclusters_msa_alignments R Documentation
Data: Contig cluster multiple sequence alignments as PopGenome GENOME objects
Description
Multiple sequence alignments of ten largest contig clusters, generated
using minimap2, mapping all cluster sequences to the longest sequence (i.e.
the cluster representative sequenc from cd hit). Sequence alignments have
been generated as .fasta files from the minimap2 .SAM files, then the
fastas loaded using the PopGenome::readData function.
Usage
btESBL_contigclusters_msa_alignments
Format
A named list of ten data GENOME objects, where name is cluster id.
joelewis101/blantyreESBL documentation built on Nov. 1, 2023, 1:43 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| btESBL_contigclusters_msa_alignments | R Documentation |
Data: Contig cluster multiple sequence alignments as PopGenome GENOME objects
Description
Multiple sequence alignments of ten largest contig clusters, generated using minimap2, mapping all cluster sequences to the longest sequence (i.e. the cluster representative sequenc from cd hit). Sequence alignments have been generated as .fasta files from the minimap2 .SAM files, then the fastas loaded using the PopGenome::readData function.
Usage
btESBL_contigclusters_msa_alignments
Format
A named list of ten data GENOME objects, where name is cluster id.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.