btESBL_ecoli_globalst131_tree: Data: E. coli ST131 global phylogeny
In joelewis101/blantyreESBL: Data and Code Repository For a Study Describing Antimicrobial Resistance in Blantyre, Malawi
btESBL_ecoli_globalst131_tree R Documentation
Data: E. coli ST131 global phylogeny
Description
Midpoint rooted maximum likelihood phylogeny for E. coli
incorporating all ST131 study isolates and all ST131 E. coli
from a study of global ST131
(Mcnally et al 2019 https://doi.org/10.1128/mBio.00644-19)
reconstructed from a multiple sequence alignment from mapping to reference.
(see manuscript for details)
Usage
btESBL_ecoli_globalst131_tree
Format
A "phylo" object ("ape" package)
joelewis101/blantyreESBL documentation built on Nov. 1, 2023, 1:43 p.m.
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| btESBL_ecoli_globalst131_tree | R Documentation |
Data: E. coli ST131 global phylogeny
Description
Midpoint rooted maximum likelihood phylogeny for E. coli incorporating all ST131 study isolates and all ST131 E. coli from a study of global ST131 (Mcnally et al 2019 https://doi.org/10.1128/mBio.00644-19) reconstructed from a multiple sequence alignment from mapping to reference. (see manuscript for details)
Usage
btESBL_ecoli_globalst131_tree
Format
A "phylo" object ("ape" package)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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