btESBL_ecoli_globalst167_tree: Data: E. coli ST167 global phylogeny
In joelewis101/blantyreESBL: Data and Code Repository For a Study Describing Antimicrobial Resistance in Blantyre, Malawi
btESBL_ecoli_globalst167_tree R Documentation
Data: E. coli ST167 global phylogeny
Description
Midpoint rooted maximum likelihood core gene phylogeny for E. coli
incorporating all ST167 study isolates and 108 ST167 context genomes from
Patino-Navarrete et al 2020 (doi:10.1186/s13073-019-0699-6) obtained from
multiple sequence alignment from mapping to reference.
(see manuscript for details)
Usage
btESBL_ecoli_globalst167_tree
Format
A "phylo" object ("ape" package)
joelewis101/blantyreESBL documentation built on Nov. 1, 2023, 1:43 p.m.
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| btESBL_ecoli_globalst167_tree | R Documentation |
Data: E. coli ST167 global phylogeny
Description
Midpoint rooted maximum likelihood core gene phylogeny for E. coli incorporating all ST167 study isolates and 108 ST167 context genomes from Patino-Navarrete et al 2020 (doi:10.1186/s13073-019-0699-6) obtained from multiple sequence alignment from mapping to reference. (see manuscript for details)
Usage
btESBL_ecoli_globalst167_tree
Format
A "phylo" object ("ape" package)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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