API for johannesnicolaus/ASURAT_source
Assisting Interpretable Classifications in Single-cell Transcriptomics
| Global functions | |
|---|---|
| asurat_add_qcmetrics | Man page Source code |
| asurat_quick_genefilter | Man page Source code |
| auto_find_marker_gene | Man page Source code |
| auto_find_marker_sign | Man page Source code |
| cerv_asurat | Man page |
| classify_samples_hclustCutree_sign | Man page Source code |
| classify_samples_merlot_sign | Man page Source code |
| classify_samples_pam_sign | Man page Source code |
| classify_samples_seuratFindClusters_sign | Man page Source code |
| collect_CO | Man page Source code |
| collect_DO | Man page Source code |
| collect_GO | Man page Source code |
| collect_KEGG | Man page Source code |
| collect_Reactome | Man page Source code |
| compute_IC_CO | Man page Source code |
| compute_IC_DO | Man page Source code |
| compute_IC_GO | Man page Source code |
| compute_SemSim_sign | Man page Source code |
| compute_nswaps | Man page Source code |
| concatenate_obj_sign | Man page Source code |
| do_CalculateElasticTree_dmap | Man page Source code |
| do_CalculatePseudotimes_dmap | Man page Source code |
| do_CalculateScaffoldTree_dmap | Man page Source code |
| do_DiffusionMap_sign | Man page Source code |
| do_SignSpaceEmbedding_dmap | Man page Source code |
| do_cellTypeToGenes | Man page Source code |
| do_enrichGO_seurat | Man page Source code |
| do_groupGO | Man page Source code |
| do_keggGet | Man page Source code |
| do_pca_sign | Man page Source code |
| do_quickQC | Man page Source code |
| do_quickQC_sign | Man page Source code |
| do_simplifyGO_seurat | Man page Source code |
| do_tsne_sign | Man page Source code |
| do_umap_sign | Man page Source code |
| find_descendants | Man page Source code |
| find_inflection | Source code |
| find_marker_gene | Man page Source code |
| find_marker_sign | Man page Source code |
| format_CO | Man page Source code |
| format_DO | Man page Source code |
| format_GO | Man page Source code |
| format_KEGG | Man page Source code |
| format_Reactome | Man page Source code |
| get_CO | Man page Source code |
| get_DO | Man page Source code |
| get_GO | Man page Source code |
| get_KEGG | Man page Source code |
| get_Reactome | Man page Source code |
| get_db | Man page Source code |
| make_asurat_obj | Man page Source code |
| make_signxsample_matrix | Man page Source code |
| make_treeTable_CO | Man page Source code |
| manual_curation_sign | Man page Source code |
| manual_selection_sign | Man page Source code |
| pbmc_asurat | Man page |
| plot_DiffusionMap_sign | Source code |
| plot_ElasticTree_dmap | Source code |
| plot_GObarplot_seurat | Source code |
| plot_GOemapplot_seurat | Man page Source code |
| plot_Heatmap_GenexSamp | Source code |
| plot_Heatmap_SignxSamp | Source code |
| plot_MultiBargraphs_sign | Source code |
| plot_MultiHeatmaps_SignxSamp | Source code |
| plot_Pseudotime_dmap | Source code |
| plot_bargraph_seurat | Man page Source code |
| plot_bargraph_sign | Source code |
| plot_dmap_geneExpression | Source code |
| plot_dmap_signScore | Source code |
| plot_meanReads_wAnnotation | Source code |
| plot_metaData | Source code |
| plot_metaData_wAnnotation | Source code |
| plot_pcaEigen_seurat | Man page Source code |
| plot_pseudotime_vs_signscore | Source code |
| plot_tsne_geneExpression | Source code |
| plot_tsne_nReads_seurat | Man page Source code |
| plot_tsne_seurat | Man page Source code |
| plot_tsne_sign | Source code |
| plot_tsne_signExpression_seurat | Man page Source code |
| plot_tsne_signScore | Source code |
| plot_umap_geneExpression | Source code |
| plot_umap_seurat | Man page Source code |
| plot_umap_sign | Source code |
| plot_umap_signExpression_seurat | Man page Source code |
| plot_umap_signScore | Source code |
| plot_variableFeatures_seurat | Man page Source code |
| plot_violin_signScore | Source code |
| process_001_seurat | Man page Source code |
| process_002_seurat | Man page Source code |
| rcpp_hello | Source code |
| reduce_sign | Man page Source code |
| select_sign | Man page Source code |
| separate_variables_sign | Man page Source code |
| trim_samples | Man page Source code |
| trim_variables | Man page Source code |
