sig_cr_enriched_heatmap: Visualize significantly correlated regions

In jokergoo/epik: Integrative Analysis and Visualization of Epigenomic Sequencing Data

Description

Visualize significantly correlated regions

Usage

sig_cr_enriched_heatmap(cr, txdb, fdr_cutoff = 0.05, meth_diff_cutoff = 0.1)

Arguments

cr	correlated regions, should be returned by cr_enriched_heatmap.
txdb	transcriptome annotation which was used in correlated_regions
fdr_cutoff	cutoff for fdr
meth_diff_cutoff	cutoff for methylation difference. If there are no subgroup information or only one subgroup, meth_IQR column is used for filtering. If there are more than one subgroups, meth_diameter column is used for filtering.

Details

There are two heatmaps which corresponds to significant negative correlated regions and positive correlated regions. Rows are same as the heatmaps produced by cr_enriched_heatmap.

Value

No value is returned.

Author(s)

Zuguang Gu <[e-mail]>

Examples

# There is no example
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jokergoo/epik documentation built on Sept. 28, 2019, 9:20 a.m.