sig_cytoband_gtrellis: Visualize correlations in cytoband

In jokergoo/epik: Integrative Analysis and Visualization of Epigenomic Sequencing Data

Description

Visualize correlations in cytoband

Usage

sig_cytoband_gtrellis(cr, txdb, cytoband_list, color_head = TRUE)

Arguments

cr	correlated regions returned from cr_enriched_heatmap
txdb	transcriptome annotation which was used in correlated_regions
cytoband_list	a list of cytoband returned by cr_genes_gtrellis
color_head	internal use

Details

This function visualizes significant cytobands which have been found in cr_genes_gtrellis.

For each cytoband, there are several tracks:

• cytoband name. Green corresponds to significant cytobands in group 1 and red corresponds to group 4

• points showing correlations

• a one row heamtap showing mean correlation in 50kb window

• genes, green lines are genes in cluster 1, red lines are genes in cluster 4.

Value

No value is returned.

Author(s)

Zuguang Gu <[e-mail]>

Examples

# There is no example
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jokergoo/epik documentation built on Sept. 28, 2019, 9:20 a.m.