Man pages for juliancandia/mutSigMapper
Mapping Spectra to Mutational Signatures Based on Shot-Noise Modeling
| export | generates plain text files from mutSigMapper object |
| mutSigMapper | maps spectra to mutational signatures |
| mutSigMapper-internal | Internal mutSigMapper functions |
| mutSigMapper-package | maps spectra to mutational signatures |
| plotSpectraCaterpillar | generates caterpillar plot of signature weights for... |
| plotSpectraHeatmap | generates heatmap plots of spectra vs mutational signatures |
| ref_bkg_exome | Trinucleotide counts in the human exome |
| ref_bkg_genome | Trinucleotide counts in the human genome |
| ref_cosmic_v2 | COSMIC v2 (March 2015) compendium |
| ref_cosmic_v3 | COSMIC v3 (May 2019) compendium |
| ref_cosmic_v3.1 | COSMIC v3.1 (June 2020) compendium |
| ref_cosmic_v3_exome | COSMIC v3 (May 2019) compendium (exome reference) |
| ref_mutagen53 | Mutagen compendium (Kucab et al, May 2019) |
| spectra | Example spectra dataset |
| WES_TCGA | Whole exome sequencing datasets from TCGA |
| WGS_PCAWG | Whole genome sequencing datasets from PCAWG |
