ref_bkg_genome: Trinucleotide counts in the human genome
In juliancandia/mutSigMapper: Mapping Spectra to Mutational Signatures Based on Shot-Noise Modeling
Description
Data frame with the human genome (hg19) counts corresponding to the 96 single-nucleotide-substitution trinucleotide contexts (adapted from package deconstructSigs by Rosenthal et al.). It is used by the sig.bkg.adj argument in mutSigMapper.
Usage
1
References
Rosenthal R et al.
DeconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution, Genome Biol. 17, 31 (2016).
juliancandia/mutSigMapper documentation built on Oct. 19, 2020, 3:58 a.m.
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Description
Data frame with the human genome (hg19) counts corresponding to the 96 single-nucleotide-substitution trinucleotide contexts (adapted from package deconstructSigs by Rosenthal et al.). It is used by the sig.bkg.adj argument in mutSigMapper.
Usage
1 |
References
Rosenthal R et al. DeconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution, Genome Biol. 17, 31 (2016).
R Package Documentation
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