WES_TCGA: Whole exome sequencing datasets from TCGA

In juliancandia/mutSigMapper: Mapping Spectra to Mutational Signatures Based on Shot-Noise Modeling

Description

Data frame that contains the mutational counts of 9493 pan-cancer samples from 32 different cancer types (columns) along the 96 single-nucleotide-substitution trinucleotide contexts (rows) based on whole exome sequencing from the Cancer Genome Project (TCGA).

Usage

data(WES_TCGA)

Format

A list that contains:

• spectra: Data frame with mutational counts for all samples (columns) across 96 trinucleotide contexts (rows).

• sample_study: Data frame with sample names and the study they belong to. Rows in this data frame correspond to (and appear in the same order as) columns in the spectra data frame.

References

The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Network. Pan-cancer analysis of whole genomes. Nature 578, 82-93 (2019).

The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, https://dcc.icgc.org/releases/PCAWG

juliancandia/mutSigMapper documentation built on Oct. 19, 2020, 3:58 a.m.