ref_mutagen53: Mutagen compendium (Kucab et al, May 2019)
In juliancandia/mutSigMapper: Mapping Spectra to Mutational Signatures Based on Shot-Noise Modeling
Description
Usage
Format
References
Description
Compendium of 53 annotated mutational signatures represented by 96 single-nucleotide-substitution trinucleotide contexts based on the observed trinucleotide frequency of the human genome.
Usage
1
Format
A list that contains:
sig: Data frame with substitution type, subtype, and signatures (columns) across 96 trinucleotide contexts (rows).
desc: Data frame with treatment annotations for each signature in the compendium.
References
Kucab JE, Zou X, Morganella S, ..., Arlt VM, Phillips DH, and Nik-Zainal S,
A Compendium of Mutational Signatures of Environmental Agents, Cell 177, 821-836.e16 (2019).
juliancandia/mutSigMapper documentation built on Oct. 19, 2020, 3:58 a.m.
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Description Usage Format References
Description
Compendium of 53 annotated mutational signatures represented by 96 single-nucleotide-substitution trinucleotide contexts based on the observed trinucleotide frequency of the human genome.
Usage
1 |
Format
A list that contains:
sig: Data frame with substitution type, subtype, and signatures (columns) across 96 trinucleotide contexts (rows).desc: Data frame with treatment annotations for each signature in the compendium.
References
Kucab JE, Zou X, Morganella S, ..., Arlt VM, Phillips DH, and Nik-Zainal S, A Compendium of Mutational Signatures of Environmental Agents, Cell 177, 821-836.e16 (2019).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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