WGS_PCAWG: Whole genome sequencing datasets from PCAWG
In juliancandia/mutSigMapper: Mapping Spectra to Mutational Signatures Based on Shot-Noise Modeling
Description
Usage
Format
References
Description
Data frame that contains the mutational counts of 2780 pan-cancer samples from 37 different cancer types (columns) along the 96 single-nucleotide-substitution trinucleotide contexts (rows) based on whole genome sequencing from the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Network.
Usage
1
Format
A list that contains:
spectra: Data frame with mutational counts for all samples (columns) across 96 trinucleotide contexts (rows).
sample_study: Data frame with sample names and the study they belong to. Rows in this data frame correspond to (and appear in the same order as) columns in the spectra data frame.
References
The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Network. Pan-cancer analysis of whole genomes. Nature 578, 82-93 (2019).
The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, https://dcc.icgc.org/releases/PCAWG
juliancandia/mutSigMapper documentation built on Oct. 19, 2020, 3:58 a.m.
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Description Usage Format References
Description
Data frame that contains the mutational counts of 2780 pan-cancer samples from 37 different cancer types (columns) along the 96 single-nucleotide-substitution trinucleotide contexts (rows) based on whole genome sequencing from the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Network.
Usage
1 |
Format
A list that contains:
spectra: Data frame with mutational counts for all samples (columns) across 96 trinucleotide contexts (rows).sample_study: Data frame with sample names and the study they belong to. Rows in this data frame correspond to (and appear in the same order as) columns in thespectradata frame.
References
The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Network. Pan-cancer analysis of whole genomes. Nature 578, 82-93 (2019).
The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, https://dcc.icgc.org/releases/PCAWG
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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