counts2log: A function to convert raw count in log counts

In kendomaniac/CASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

A function to convert raw count in log counts

Description

This function convert raw counts in log format

Usage

counts2log(file, log.base = c(2, 10))

Arguments

file,	a character string indicating the path of the file. IMPORTANT: full path to the file MUST be included.
log.base,	the base of the log to be used for the transformation

Value

log transformed table

Author(s)

Raffaele Calogero, raffaele.calogero [at] unito [dot] it, University of Torino

Examples

## Not run: 
    system("wget http://130.192.119.59/public/TO BE INSERTED")
    #running skeleton
    counts2log(file=paste(getwd(), "example_UMI.txt", sep="/"), log.base=10)

## End(Not run)

kendomaniac/CASC documentation built on Oct. 4, 2023, 11:10 a.m.