dimensions: Cells count table size

In kendomaniac/CASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

Cells count table size

Description

This function executes a ubuntu docker that counts row and colums of a counts table.

Usage

dimensions(group = c("sudo", "docker"), scratch.folder, file, separator)

Arguments

group,	a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder,	a character string indicating the path of the scratch folder
file,	a character string indicating the path of the file, with file name and extension included
separator,	separator used in count file, e.g. '\t', ','

Value

a file called dimensions.txt containing the number of row and columns of a cells counts table

Author(s)

Luca Alessandri, alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino

Examples

## Not run: 
system("wget http://130.192.119.59/public/annotated_setPace_10000_noC5.txt.zip")
unzip("annotated_setPace_10000_noC5.txt.zip")
dimensions(group="docker", scratch.folder="/data/scratch",
            file=paste(getwd(),"annotated_setPace_10000_noC5.txt", sep="/"), separator="\t")

## End(Not run)

kendomaniac/CASC documentation built on Oct. 4, 2023, 11:10 a.m.