genesUmi | R Documentation |
This function create a plot in which genes are plotted with respect to total counts UMI for each cell.
genesUmi(file, umiXgene = 3, sep)
file |
a character string indicating the path of the file tab delimited of cells un-normalized expression counts. |
umiXgene |
a integer defining how many UMI are required to call a gene as present. default: 3 |
sep |
separator used in count file, e.g. '\t', ',' |
pdf with the cells counts distributions: genes.umi.pdf
## Not run:
system("wget http://130.192.119.59/public/testSCumi_mm10.csv.zip")
unzip("testSCumi_mm10.csv.zip")
genesUmi(file=paste(getwd(),"testSCumi_mm10.csv",sep="/"), umiXgene=3, sep=",")
## End(Not run)
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