deltaFilter: Filterin

In kendomaniac/CASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

Filterin

Description

This function filter matrix raw count

Usage

deltaFilter(
  threshold,
  minDelta,
  minNGene,
  original,
  menoRibo,
  separator,
  format,
  wf
)

Arguments

threshold	value to estimate if a gene is significatively expressed
minDelta	filtering value for the minimun difference value between genes WMT&rib and genes without MT and without RB
minNGene	filtering value for the minimun number of gene
original	matrix name without annotation
menoRibo	matrix name with annotation
separator	matrix separator value
format	matrix format
wf	if this parameter is setted to 0 your filtering will be minDelta and minNGene based, otherwise it will take the top wf cells with the higher number of genes significatively expressed

Value

filtered matrix table

Author(s)

Luca Alessandri, alessandri.luca [at] gmail [dot] com, University of Torino

Examples

## Not run: 
   TOO BE MADE

## End(Not run)

kendomaniac/CASC documentation built on June 30, 2024, 3:27 a.m.