crossLabel: Cross Label

In kendomaniac/CASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

Cross Label

Description

This function executes a ubuntu docker that produces informations about the true clusters

Usage

crossLabel(
  group = c("sudo", "docker"),
  scratch.folder,
  file,
  nCluster,
  separator,
  finalName
)

Arguments

group,	a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder,	a character string indicating the path of the scratch folder
file,	a character string indicating the path of the file, with file name and extension included
nCluster,	number of interested cluster used for analysis
separator,	separator used in count file, e.g. '\t', ','
finalName,	name of the result label plot

Value

Csv file with cluster component informations and dataPlot and pie chart based on true Label

Author(s)

Luca Alessandri, alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino

Examples

## Not run: 
 crossLabel("docker","/home/lucastormreig/CASC5.0/7_crossLabel/scratch/","/home/lucastormreig/CASC5.0/7_crossLabel/Data/New_Buettner",3,",")#

## End(Not run)

kendomaniac/CASC documentation built on Oct. 4, 2023, 11:10 a.m.