downloadContainers: Download for the first time all containers embedded in the...

In kendomaniac/CASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

Download for the first time all containers embedded in the workflows

Description

This is a functin that preapre the docker environment to be used for the first time the docker4seq is installed.

Usage

downloadContainers(
  group = "docker",
  containers.file = c("full", "mini", "nano", "sca")
)

Arguments

group,

a character string. Two options: "sudo" or "docker", depending to which group the user belongs

containers.file,

a character string with the name of the file which indicate which are the initial set of containers to be downloaded. options: full, mini, nano, sca The set is given by a file located in the folder containers of docker4seq package, full indicates a complete installation, mini refers to an installation including few preprocessing and all clustering tools, nano even a smaller implementation, sca the minimal subset of dockers to run an analysis with Partialy Connected Autoencoders

Author(s)

Raffaele Calogero

Examples

## Not run: 
    #running runDocker
     downloadContainers(group="docker", containers.file="full")


## End(Not run)

kendomaniac/CASC documentation built on Oct. 4, 2023, 11:10 a.m.