annotate_chain_count: Annotate number of TRA, TRB, IGL, IGK, and IGH reads per...
In keshav-motwani/scanalysis: Multi-Sample Visualization and Immune Repertoire Analysis Utilities for Single-Cell Data
Description
Usage
Arguments
Value
Examples
View source: R/annotate_chain_count.R
Description
Columns count_TRA, count_TRB, count_IGL, count_IGK, count_IGH, and count_TRA_TRB_IGL_IGK_IGH (underscore delimited concatenation of previous 5 columns) are added to colData(sce)
Usage
1
annotate_chain_count(sce)
Arguments
sce
SingleCellExperiment object with a column named vdj containing contig_annotations in colData
Value
SingleCellExperiment object with new count columns in colData
Examples
1
keshav-motwani/scanalysis documentation built on Feb. 4, 2021, 2:21 a.m.
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Description Usage Arguments Value Examples
View source: R/annotate_chain_count.R
Description
Columns count_TRA, count_TRB, count_IGL, count_IGK, count_IGH, and count_TRA_TRB_IGL_IGK_IGH (underscore delimited concatenation of previous 5 columns) are added to colData(sce)
Usage
1 | annotate_chain_count(sce)
|
Arguments
sce |
SingleCellExperiment object with a column named vdj containing contig_annotations in colData |
Value
SingleCellExperiment object with new count columns in colData
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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