dot-prepare_volcano_annotations: Prepare annotations for volcano plot

In keshav-motwani/scanalysis: Multi-Sample Visualization and Immune Repertoire Analysis Utilities for Single-Cell Data

Description

Prepare annotations for volcano plot

Usage

.prepare_volcano_annotations(
  data,
  fold_change,
  p_value,
  label,
  n_annotate_top,
  annotations,
  annotations_if_threshold,
  annotations_if_column,
  p_value_threshold,
  fold_change_threshold,
  p_value_rank_threshold,
  rank_by,
  facet_rows,
  facet_columns
)

Arguments

data	differential expression results
fold_change	column containing fold change data (x-axis)
p_value	column containing p-value data (y-axis is -log10(p_value))
label	column for text annotation
n_annotate_top	number of top DE genes to annotate
annotations	features to be annotated
annotations_if_threshold	features to be annotated iff they meet the thresholds
p_value_threshold	maximum p-value
fold_change_threshold	minimum absolute fold change threshold
p_value_rank_threshold	maximum p-value rank threshold
facet_rows	columns for faceting by row
facet_columns	columns for faceting by column

Examples

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keshav-motwani/scanalysis documentation built on Feb. 4, 2021, 2:21 a.m.