annotate_clonotype_count: Annotate number of occurrences of a given clonotype in a...
In keshav-motwani/scanalysis: Multi-Sample Visualization and Immune Repertoire Analysis Utilities for Single-Cell Data
Description
Usage
Arguments
Value
Examples
View source: R/annotate_clonotype_count.R
Description
Annotate number of occurrences of a given clonotype in a sample
Usage
1
annotate_clonotype_count(sce, clonotype_name = "clonotype", group_by = c())
Arguments
sce
SingleCellExperiment object
clonotype_name
name of column in colData containing clonotype - can be generated using 'assign_clonotypes'.
group_by
columns to group repertoires by - only counts clonotypes within groups
Value
SingleCellExperiment object with added columns to colData including "clonotype", "clonotype_count", and "clonotype_count_2:10"
Examples
1
keshav-motwani/scanalysis documentation built on Feb. 4, 2021, 2:21 a.m.
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Description Usage Arguments Value Examples
View source: R/annotate_clonotype_count.R
Description
Annotate number of occurrences of a given clonotype in a sample
Usage
1 | annotate_clonotype_count(sce, clonotype_name = "clonotype", group_by = c())
|
Arguments
sce |
SingleCellExperiment object |
clonotype_name |
name of column in colData containing clonotype - can be generated using 'assign_clonotypes'. |
group_by |
columns to group repertoires by - only counts clonotypes within groups |
Value
SingleCellExperiment object with added columns to colData including "clonotype", "clonotype_count", and "clonotype_count_2:10"
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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