compute_evenness_profile_long: Compute tidied data frame of evenness profiles per group...

In keshav-motwani/scanalysis: Multi-Sample Visualization and Immune Repertoire Analysis Utilities for Single-Cell Data

Description

Compute tidied data frame of evenness profiles per group based on clonotype frequency distributions

Usage

compute_evenness_profile_long(
  sce_list,
  group_by = c(),
  min_alpha = 0,
  max_alpha = 10,
  alpha_steps = 51
)

Arguments

sce_list	Named list of SingleCellExperiment objects
group_by	Character vector of column names from colData to use to construct groups for clonotype counting
min_alpha	Minimum Renyi entropy alpha
max_alpha	Maximum Renyi entropy alpha
alpha_steps	Number of steps in between min_alpha and max_alpha

Examples

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keshav-motwani/scanalysis documentation built on Feb. 4, 2021, 2:21 a.m.