dot-prepare_gex_bivariate_counts: Prepare counts of cells that meet filter criteria to annotate...

In keshav-motwani/scanalysis: Multi-Sample Visualization and Immune Repertoire Analysis Utilities for Single-Cell Data

Description

Prepare counts of cells that meet filter criteria to annotate based on two filters

Usage

.prepare_gex_bivariate_counts(
  data,
  x,
  y,
  x_filter,
  y_filter,
  x_log,
  y_log,
  sample_name,
  facets
)

Arguments

data	Result from .prepare_gex_data
x	Feature from colData to plot distribution of
y	Feature from colData to plot distribution of
x_filter	Filter for a sample from scater::isOutlier, or a vector with attribute named thresholds that is a vector with min and max allowed values
y_filter	Filter for a sample from scater::isOutlier, or a vector with attribute named thresholds that is a vector with min and max allowed values
x_log	Boolean to plot x on log-scale or not
y_log	Boolean to plot y on log-scale or not
sample_name	Sample name
facets	Features from colData to facet on

Examples

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keshav-motwani/scanalysis documentation built on Feb. 4, 2021, 2:21 a.m.