encode_vdj_identity_frequency_matrix: Encode frequencies of (combinations) of values in columns...

In keshav-motwani/scanalysis: Multi-Sample Visualization and Immune Repertoire Analysis Utilities for Single-Cell Data

Description

Encode frequencies of (combinations) of values in columns from colData into a matrix with rows as groups and columns as features

Usage

encode_vdj_identity_frequency_matrix(
  sce_list,
  attributes,
  group_by = c(),
  normalize = "none"
)

Arguments

sce_list	List of SCE objects, all containing relevant attributes in colData(sce)$vdj as columns
attributes	Column names from unnested colData(sce)$vdj which to encode
group_by	Column names from colData which to group by (compute frequencies per group)
normalize	Normalization method - either "none" or "relative_frequency"

Examples

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keshav-motwani/scanalysis documentation built on Feb. 4, 2021, 2:21 a.m.