col.abs | Color scale for a specified quantile. This scale is intended... |
col.z | Color scale for a specified quantile. This scale is intended... |
cond.col | Color scale for categorical data. |
cond.col.vec | Creates a color scale for the levels in a vector, then... |
CrobustaMotifs | PWMs for 1487 potential TF binding sites. |
dir.apply | Wrapper for applying a write function to each element of list... |
dir.csv | Concatenates a path, filename, and file extension into an... |
dir.eps | Concatenates a path, filename, and file extension into an... |
dir.export | Concatenates a path, filename, and file extension into an... |
dir.gg | Concatenates a path, filename, and file extension into an... |
dir.hist | Accepts a numeric vector and writes a histogram in EPS format... |
dir.img | Concatenates a path, filename, and file extension into an... |
dir.out | Concatenates a path, filename, and file extension into an... |
dir.pdf | Concatenates a path, filename, and file extension into an... |
dir.png | Concatenates a path, filename, and file extension into an... |
dir.svg | Concatenates a path, filename, and file extension into an... |
dir.tab | Concatenates a path, filename, and file extension into an... |
getFeatures | Parses a genome file in GFF format into a list of... |
getMatches | Searches a given set of genomic ranges for the motifs... |
getOverlapMat | Converts gene-peak table to a logical matrix of associations |
getOverlaps | Finds all overlaps between one of the genomic features... |
hm.ann | Wrapper for 'hm.cell()' which applies cell dimensions to... |
hm.cell | Wrapper for 'Heatmap()' which allows specifying cell... |
hmdot | accepts the results of a hypergeometric test applied to each... |
lrtab | Applies a function to all file names in a specified directory... |
matchPois | Accepts a vector of peak IDs, and performs a Poisson test for... |
mkdate | Creates a file path from a name, directory, and extension,... |
regMat | Determines a matrix of potential regulatory TFs. |
rmdup | Accepts a PWMatrixList and an output from... |
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