matchPois: Accepts a vector of peak IDs, and performs a Poisson test for...
In kewiechecki/atacSeqFns: Utility functions for working with ATAC-seq peaks.
Description
Usage
Arguments
Value
See Also
Description
Accepts a vector of peak IDs, and performs a Poisson test for enrichmet of motifs in peaks versus a background of all elements in matches.
Usage
1
matchPois(peaks, matches, padj.method = "fdr", allow.duplicates = F)
Arguments
peaks
A character vector of peak IDs corresponding to the row.names of matches.
matches
An output from motifmatchr::matchMotifs.
padj.method
The method to be used by p.adjust().
allow.duplicates
Whether to remove duplicates from peaks.
Value
A data.frame containing the test results.
See Also
getMatches, motifmatchr::matchMotifs
kewiechecki/atacSeqFns documentation built on Sept. 27, 2020, 8:25 a.m.
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Description Usage Arguments Value See Also
Description
Accepts a vector of peak IDs, and performs a Poisson test for enrichmet of motifs in peaks versus a background of all elements in matches.
Usage
1 | matchPois(peaks, matches, padj.method = "fdr", allow.duplicates = F)
|
Arguments
peaks |
A character vector of peak IDs corresponding to the |
matches |
An output from motifmatchr::matchMotifs. |
padj.method |
The method to be used by |
allow.duplicates |
Whether to remove duplicates from |
Value
A data.frame containing the test results.
See Also
getMatches, motifmatchr::matchMotifs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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