getMatches: Searches a given set of genomic ranges for the motifs...
In kewiechecki/atacSeqFns: Utility functions for working with ATAC-seq peaks.
Description
Usage
Arguments
Value
See Also
Description
Searches a given set of genomic ranges for the motifs returned by mergeMotifs.
The background frequency is obtained from the total nucleotide frequencies in peaks.
Usage
1
getMatches(peaks, genome, out = "matches", motifs = CrobustaMotifs, ...)
Arguments
peaks
A GenomicRanges or other subject input for matchMotifs.
genome
A BSgenome object or other genome input for matchMotifs.
out
Type of output to return.
motifs
A PWMatrixList.
...
Additional arguments to matchMotifs()
Value
A matches object.
See Also
mergeMotifs, motifmatchr::matchMotifs
kewiechecki/atacSeqFns documentation built on Sept. 27, 2020, 8:25 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also
Description
Searches a given set of genomic ranges for the motifs returned by mergeMotifs. The background frequency is obtained from the total nucleotide frequencies in peaks.
Usage
1 | getMatches(peaks, genome, out = "matches", motifs = CrobustaMotifs, ...)
|
Arguments
peaks |
A GenomicRanges or other subject input for matchMotifs. |
genome |
A BSgenome object or other genome input for matchMotifs. |
out |
Type of output to return. |
motifs |
A PWMatrixList. |
... |
Additional arguments to |
Value
A matches object.
See Also
mergeMotifs, motifmatchr::matchMotifs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.