hmdot: accepts the results of a hypergeometric test applied to each...

In kewiechecki/atacSeqFns: Utility functions for working with ATAC-seq peaks.

Description

accepts the results of a hypergeometric test applied to each cell in a matrix and writes a dotplot of the results

Usage

hmdot(
  odds,
  fdr,
  q,
  file,
  path = ".",
  cell.dim = 0.15,
  width = 12,
  height = 12,
  ...
)

Arguments

odds	A matrix of log2 odds ratios from an enrichment test.
fdr	A matrix of FDR values from an enrichment test.
q	A matrix of test counts for each test.
file	The output file name.
path	The output file path.
cell.dim	The width & height of each heatmap cell in inches.
width	The width of the output device in inches.
height	The height of the output device in inches.
...	Additional arguments to hm.cell().

kewiechecki/atacSeqFns documentation built on Sept. 27, 2020, 8:25 a.m.