getFeatures: Parses a genome file in GFF format into a list of...
In kewiechecki/atacSeqFns: Utility functions for working with ATAC-seq peaks.

Parses a genome file in GFF format into a list of GRangesLists organized by gene and genomic feature. Parsed genomic features are exported in BED format using dir.export.

getFeatures(
  gff,
  prefix = "KY2019:",
  tssflank = c(1107, 107),
  tsswindow = 10000,
  ttswindow = 10000,
  ...
)

`gff`	Path to a genome file in GFF format.
`prefix`	Prefix to append to gene IDs.
`tssflank`	Numeric vector of length 2 giving the window in bp upstream and downstream of the TSS to use as the promoter.
`tsswindow`	How many bp upstream of the promoter to consider as upstream of a gene.
`ttswindow`	How many bp downstream of the TTS to consider as downstream of a gene.
`...`	Additional arguments to `dir.export()`