Cells sequenced using RNA-seq are invariably at different stages of progression through a diverse range of biological processes. Embeddr uses the laplacian eigenmap algorithm to perform a non-linear dimensionality reduction of the scRNA-seq data before using principal curves to trace through the centre of the manifold and assign a 'pseudotime' to each cell. A range of functions for differential expression is also included.
|Bioconductor views||GeneExpression RNASeq Visualization|
|Maintainer||Kieran Campbell <[email protected]>|
|Package repository||View on GitHub|
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