kieranrcampbell/embeddr: Laplacian eigenmaps & principal curves for pseudotemporal ordering of single-cell RNA-seq data

Cells sequenced using RNA-seq are invariably at different stages of progression through a diverse range of biological processes. Embeddr uses the laplacian eigenmap algorithm to perform a non-linear dimensionality reduction of the scRNA-seq data before using principal curves to trace through the centre of the manifold and assign a 'pseudotime' to each cell. A range of functions for differential expression is also included.

Getting started

Package details

Bioconductor views GeneExpression RNASeq Visualization
MaintainerKieran Campbell <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
kieranrcampbell/embeddr documentation built on May 18, 2017, 7:45 p.m.