pseudotime: Retrieve the pseudotime assignment from sce

Description Usage Arguments Value Examples

View source: R/embeddr.R

Description

Equivalent to pData(sce)$pseudotime

Usage

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Arguments

sce

An object of class SCESet

Value

A numeric vector of pseudotimes

Examples

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library(scater)
data('sc_example_counts') ; sce <- newSCESet(countData = sc_example_counts)
sce <- embeddr(sce)
sce <- fit_pseudotime(sce)
pseudotime(sce)

kieranrcampbell/embeddr documentation built on May 18, 2017, 7:45 p.m.