fit_pseudotime_models: Generate a list of pseudotime models corresponding to ALL...
In kieranrcampbell/embeddr: Laplacian eigenmaps & principal curves for pseudotemporal ordering of single-cell RNA-seq data
Description
Usage
Arguments
Value
Examples
Description
This will iterate over every gene in the SCESet and produce a model fit
for each. WARNING: The list returned can be huge, so use only on a few genes.
Usage
1
fit_pseudotime_models(sce, n_cores = 2, ...)
Arguments
sce
An object of class SCESet
n_cores
The number of cores to use in the call to mclapply
...
Additional arguments to fit_pseudotime_model
Value
A list of models returned by AER::tobit
Examples
1
2
3
4
5
library(scater)
data('sc_example_counts') ; sce <- newSCESet(countData = sc_example_counts)
sce <- embeddr(sce)
sce <- fit_pseudotime(sce)
models <- fit_pseudotime_models(sce, n_cores = 1)
kieranrcampbell/embeddr documentation built on May 20, 2019, 9:24 a.m.
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Description Usage Arguments Value Examples
Description
This will iterate over every gene in the SCESet and produce a model fit
for each. WARNING: The list returned can be huge, so use only on a few genes.
Usage
1 | fit_pseudotime_models(sce, n_cores = 2, ...)
|
Arguments
sce |
An object of class |
n_cores |
The number of cores to use in the call to |
... |
Additional arguments to fit_pseudotime_model |
Value
A list of models returned by AER::tobit
Examples
1 2 3 4 5 | library(scater)
data('sc_example_counts') ; sce <- newSCESet(countData = sc_example_counts)
sce <- embeddr(sce)
sce <- fit_pseudotime(sce)
models <- fit_pseudotime_models(sce, n_cores = 1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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