compare_models: Perform likelihood ratio test
In kieranrcampbell/embeddr: Laplacian eigenmaps & principal curves for pseudotemporal ordering of single-cell RNA-seq data
Description
Usage
Arguments
Value
Examples
Description
Perform likelihood ratio test
Usage
1
compare_models(model, null_model)
Arguments
model
The full model y ~ pseudotime returned by AER::tobit
null_model
The null model y ~ 1 returned by AER::tobit
Value
The p-value
Examples
1
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library(scater)
data('sc_example_counts') ; sce <- newSCESet(countData = sc_example_counts)
sce <- embeddr(sce)
sce <- fit_pseudotime(sce)
full_model <- fit_pseudotime_model(sce, 1) # fit for first gene
null_model <- fit_null_model(sce, 1) # fit for first gene
pval <- compare_models(full_model, null_model)
kieranrcampbell/embeddr documentation built on May 20, 2019, 9:24 a.m.
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Description Usage Arguments Value Examples
Description
Perform likelihood ratio test
Usage
1 | compare_models(model, null_model)
|
Arguments
model |
The full model y ~ pseudotime returned by AER::tobit |
null_model |
The null model y ~ 1 returned by AER::tobit |
Value
The p-value
Examples
1 2 3 4 5 6 7 | library(scater)
data('sc_example_counts') ; sce <- newSCESet(countData = sc_example_counts)
sce <- embeddr(sce)
sce <- fit_pseudotime(sce)
full_model <- fit_pseudotime_model(sce, 1) # fit for first gene
null_model <- fit_null_model(sce, 1) # fit for first gene
pval <- compare_models(full_model, null_model)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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