plot_graph: Plot the nearest neighbour graph in the embedding
In kieranrcampbell/embeddr: Laplacian eigenmaps & principal curves for pseudotemporal ordering of single-cell RNA-seq data
Description
Usage
Arguments
Value
Examples
Description
This plots the cells in the reduced dimension and connects cells if they are
connected in the nearest neighbour graph W. A vertice between cells i and j is
coloured red if both i and j are nearest neigbours of each other and grey otherwise.
Usage
1
plot_graph(sce)
Arguments
sce
An object of class SCESet
Value
A ggplot graphic
Examples
1
2
3
4
library(scater)
data('sc_example_counts') ; sce <- newSCESet(countData = sc_example_counts)
sce <- embeddr(sce)
plot_graph(sce)
kieranrcampbell/embeddr documentation built on May 20, 2019, 9:24 a.m.
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Description Usage Arguments Value Examples
Description
This plots the cells in the reduced dimension and connects cells if they are connected in the nearest neighbour graph W. A vertice between cells i and j is coloured red if both i and j are nearest neigbours of each other and grey otherwise.
Usage
1 | plot_graph(sce)
|
Arguments
sce |
An object of class |
Value
A ggplot graphic
Examples
1 2 3 4 | library(scater)
data('sc_example_counts') ; sce <- newSCESet(countData = sc_example_counts)
sce <- embeddr(sce)
plot_graph(sce)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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