reverse_pseudotime: Reverse pseudotime
In kieranrcampbell/embeddr: Laplacian eigenmaps & principal curves for pseudotemporal ordering of single-cell RNA-seq data
Description
Usage
Arguments
Value
Examples
Description
Reverse the pseudotimes of cells via pseudotime x -> -x + max(x) + min(x)
Usage
1
reverse_pseudotime(sce)
Arguments
sce
An object of class SCESet
Value
sce with the pseudotime reversed.
Examples
1
2
3
4
5
library(scater)
data('sc_example_counts') ; sce <- newSCESet(countData = sc_example_counts)
sce <- embeddr(sce)
sce <- fit_pseudotime(sce)
sce <- reverse_pseudotime(sce)
kieranrcampbell/embeddr documentation built on May 20, 2019, 9:24 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Reverse the pseudotimes of cells via pseudotime x -> -x + max(x) + min(x)
Usage
1 | reverse_pseudotime(sce)
|
Arguments
sce |
An object of class |
Value
sce with the pseudotime reversed.
Examples
1 2 3 4 5 | library(scater)
data('sc_example_counts') ; sce <- newSCESet(countData = sc_example_counts)
sce <- embeddr(sce)
sce <- fit_pseudotime(sce)
sce <- reverse_pseudotime(sce)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.