bk_readme.md

In kindlychung/CollapsABEL: An R package for quantitative CDH analysis

Installation

In terminal:

### Download and install plink2

#### For mac
cd /tmp
wget https://bitbucket.org/kindlychung/collr2/downloads/plink-mac
mv plink-mac plink
sudo cp plink /usr/local/bin

#### For Linux
cd /tmp
wget https://bitbucket.org/kindlychung/collr2/downloads/plink-linux
mv plink-mac plink
sudo cp plink /usr/local/bin

In R:

require(devtools)
install_bitbucket("kindlychung/txtutils")
install_bitbucket("kindlychung/manqq2")
install_bitbucket("kindlychung/collr2")

Changes

• p values are not allowed to be 0
• sskn bug fixed
• steamlined workflow

To do

• email plots

kindlychung/CollapsABEL documentation built on May 20, 2019, 9:57 a.m.