Files in kokrah/cbcbSEQ
RNAseq analysis pipeline for UMD CBCB collaborators with batch effect assessment and correction
.Rbuildignore
.gitignore
DESCRIPTION
Makefile
NAMESPACE
R/.Rapp.history
R/cbcbSEQ.R
R/explore.R
R/filter.R
R/pipeline.R
R/transform.R
README.md
cbcbSEQ.Rproj
inst/doc/cbcbSEQIntro.R
inst/doc/cbcbSEQIntro.Rnw
inst/doc/cbcbSEQIntro.pdf
man/batchSEQ.Rd
man/cbcbSEQ.Rd
man/combatMod.Rd
man/filterCounts.Rd
man/log2CPM.Rd
man/makeSVD.Rd
man/pcRes.Rd
man/plotPC.Rd
man/qNorm.Rd
man/voomMod.Rd
run_tests.R
tests/testthat.R
tests/testthat/test_05cbcbseq.R
vignettes/cbcbSEQIntro.Rnw
vignettes/cbcbSEQIntro.bib
