filterCounts: Filter low expression genes, using independent filtering...

Description Usage Arguments Value

View source: R/filter.R

Description

Filter low expression genes, using independent filtering recommended in Nature Protocols paper

Usage

1
filterCounts(counts, lib.size = NULL, thresh = 1, minSamples = 2)

Arguments

counts

Count matrix

lib.size

library sizes, if missing or sum uses the total counts per samples

thresh

Minimum counts per million to determine expression

minSamples

Minimum number of samples where gene is required to be expressed. This should be set to the numer of samples in the smallest group of interest.

Value

Filtered count matrix


kokrah/cbcbSEQ documentation built on May 18, 2017, 10:41 p.m.