Description Usage Arguments Value
Filter low expression genes, using independent filtering recommended in Nature Protocols paper
1 | filterCounts(counts, lib.size = NULL, thresh = 1, minSamples = 2)
|
counts |
Count matrix |
lib.size |
library sizes, if missing or sum uses the total counts per samples |
thresh |
Minimum counts per million to determine expression |
minSamples |
Minimum number of samples where gene is required to be expressed. This should be set to the numer of samples in the smallest group of interest. |
Filtered count matrix
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