voomMod: Call modified voom on ComBatLoc adjusted data.

Description Usage Arguments Value

View source: R/transform.R

Description

This is a copy of limma's voom() with a couple changes to allow the input of log2(cpm()) data.

Usage

1
voomMod(x, design, lib.size)

Arguments

x

ComBatLoc adjusted data

design

reparameterized design matrix

lib.size

library sizes of quantile counts obtained from calling logPCM()

Value

Elist object including a plot slot containing a ggplot2 version of voom()'s plot.


kokrah/cbcbSEQ documentation built on May 18, 2017, 10:41 p.m.