log2CPM: Compute log2(quantile counts per mil reads) and library size...
In kokrah/cbcbSEQ: RNAseq analysis pipeline for UMD CBCB collaborators with batch effect assessment and correction
Description
Usage
Arguments
Value
Description
Performing a log2(cpm(quantile(counts))) of a count matrix is a quick way to get data ready for
visualization and analysis so that we may see trends more easily. Unfortunately, that format is
inappropriate for any of the differential expression tools, ergo voomMod().
Usage
1
Arguments
qcounts
quantile normalized counts
lib.size
default is colsums(qcounts)
Value
list containing log2(quantile counts per mil reads) and library sizes
kokrah/cbcbSEQ documentation built on May 20, 2019, 12:54 p.m.
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Description Usage Arguments Value
Description
Performing a log2(cpm(quantile(counts))) of a count matrix is a quick way to get data ready for visualization and analysis so that we may see trends more easily. Unfortunately, that format is inappropriate for any of the differential expression tools, ergo voomMod().
Usage
1 |
Arguments
qcounts |
quantile normalized counts |
lib.size |
default is colsums(qcounts) |
Value
list containing log2(quantile counts per mil reads) and library sizes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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