Man pages for kokrah/cbcbSEQ
RNAseq analysis pipeline for UMD CBCB collaborators with batch effect assessment and correction
| batchSEQ | a pipeline for batch correction and mean-variance function... |
| cbcbSEQ | hpgltools: a suite of tools to make our analyses easier |
| combatMod | Call ComBat function with minor adjustments |
| filterCounts | Filter low expression genes, using independent filtering... |
| log2CPM | Compute log2(quantile counts per mil reads) and library size... |
| makeSVD | Compute singular value decomposition |
| pcRes | Compute variance of each principal component and how they... |
| plotPC | Plot first 2 principal components |
| qNorm | Quantile transform counts. |
| voomMod | Call modified voom on ComBatLoc adjusted data. |
