API for kullrich/distSTRING
distSTRING calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis

Global functions
AAMatrix	Man page
AAMatrix-data	Man page
GENETIC_CODE_TCAG	Man page
aabin2aastring	Man page Source code
aastring2aabin	Man page Source code
aastring2aln	Man page Source code
aastring2dist	Man page Source code
addmask2string	Man page Source code
addpop2string	Man page Source code
addpos2string	Man page Source code
addregion2string	Man page Source code
aln2aastring	Man page Source code
aln2dnastring	Man page Source code
cds2aa	Man page Source code
codon2number	Man page Source code
codon2numberAMBIG	Man page Source code
codon2numberTCAG	Man page Source code
codonmat2pnps	Man page Source code
codonmat2xy	Man page Source code
compareCodons	Man page Source code
dnabin2dnastring	Man page Source code
dnastring2aln	Man page Source code
dnastring2codonmat	Man page Source code
dnastring2dist	Man page Source code
dnastring2dnabin	Man page Source code
dnastring2kaks	Man page Source code
globalDeletion	Man page Source code
granthamMatrix	Man page Source code
hiv	Man page
hiv-data	Man page
iupac	Man page
iupac-data	Man page
iupacMatrix	Man page Source code
rcpp_distSTRING	Man page Source code
rcpp_pairwiseDeletionAA	Man page Source code
rcpp_pairwiseDeletionDNA	Man page Source code
string2region	Man page Source code
subString	Man page Source code
uptriidx	Man page Source code

kullrich/distSTRING documentation built on Dec. 21, 2021, 8:42 a.m.

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