Files in kullrich/distSTRING
distSTRING calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
.Rbuildignore
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/AAMatrix-data.R
R/GENETIC_CODE_TCAG.R
R/RcppExports.R
R/aabin2aastring.R
R/aastring2aabin.R
R/aastring2aln.R
R/aastring2dist.R
R/addmask2string.R
R/addpop2string.R
R/addpos2string.R
R/addregion2string.R
R/aln2aastring.R
R/aln2dnastring.R
R/cds2aa.R
R/codon2numberAMBIG.R
R/codon2numberTCAG.R
R/codonmat2pnps.R
R/codonmat2xy.R
R/compareCodons.R
R/dnabin2dnastring.R
R/dnastring2aln.R
R/dnastring2codonmat.R
R/dnastring2dist.R
R/dnastring2dnabin.R
R/dnastring2kaks.R
R/globalDeletion.R
R/granthamMatrix.R
R/hiv-data.R
R/iupac-data.R
R/iupacMatrix.R
R/string2region.R
R/subString.R
R/uptriidx.R
data/AAMatrix.rda
data/hiv.rda
data/iupac.rda
man/AAMatrix-data.Rd
man/GENETIC_CODE_TCAG.Rd
man/aabin2aastring.Rd
man/aastring2aabin.Rd
man/aastring2aln.Rd
man/aastring2dist.Rd
man/addmask2string.Rd
man/addpop2string.Rd
man/addpos2string.Rd
man/addregion2string.Rd
man/aln2aastring.Rd
man/aln2dnastring.Rd
man/cds2aa.Rd
man/codon2numberAMBIG.Rd
man/codon2numberTCAG.Rd
man/codonmat2pnps.Rd
man/codonmat2xy.Rd
man/compareCodons.Rd
man/dnabin2dnastring.Rd
man/dnastring2aln.Rd
man/dnastring2codonmat.Rd
man/dnastring2dist.Rd
man/dnastring2dnabin.Rd
man/dnastring2kaks.Rd
man/globalDeletion.Rd
man/granthamMatrix.Rd
man/hiv-data.Rd
man/iupac-data.Rd
man/iupacMatrix.Rd
man/rcpp_distSTRING.Rd
man/rcpp_pairwiseDeletionAA.Rd
man/rcpp_pairwiseDeletionDNA.Rd
man/string2region.Rd
man/subString.Rd
man/uptriidx.Rd
src/RcppExports.cpp
src/rcpp_distSTRING.cpp
src/rcpp_pairwiseDeletionAA.cpp
src/rcpp_pairwiseDeletionDNA.cpp
src/symbols.rds
tests/testthat.R
tests/testthat/test-GENETIC_CODE_TCAG.R
tests/testthat/test-aabin2aastring.R
tests/testthat/test-aastring2aabin.R
tests/testthat/test-aastring2aln.R
tests/testthat/test-aastring2dist.R
tests/testthat/test-addmask2string.R
tests/testthat/test-addpop2string.R
tests/testthat/test-addpos2string.R
tests/testthat/test-addregion2string.R
tests/testthat/test-aln2aastring.R
tests/testthat/test-aln2dnastring.R
tests/testthat/test-cds2aa.R
tests/testthat/test-codon2numberAMBIG.R
tests/testthat/test-codon2numberTCAG.R
tests/testthat/test-codonmat2pnps.R
tests/testthat/test-codonmat2xy.R
tests/testthat/test-compareCodons.R
tests/testthat/test-dnabin2dnastring.R
tests/testthat/test-dnastring2aln.R
tests/testthat/test-dnastring2dist.R
tests/testthat/test-dnastring2dnabin.R
tests/testthat/test-dnastring2kaks.R
tests/testthat/test-globalDeletion.R
tests/testthat/test-granthamMatrix.R
tests/testthat/test-iupacMatrix.R
tests/testthat/test-rcpp_distSTRING.R
tests/testthat/test-rcpp_pairwiseDeletionAA.R
tests/testthat/test-rcpp_pairwiseDeletionDNA.R
tests/testthat/test-subString.R
tests/testthat/test-uptriidx.R
vignettes/bibliography.bib
vignettes/distSTRING.Rmd
