rcpp_distSTRING: rcpp_distSTRING
In kullrich/distSTRING: distSTRING calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
Description
Usage
Arguments
Value
Author(s)
Examples
Description
calcualtes pairwise distances using a score matrix
Usage
1
rcpp_distSTRING(dnavector, scoreMatrix, ncores = 1L)
Arguments
dnavector
StringVector
scoreMatrix
NumericMatrix
ncores
number of cores
Value
list
Author(s)
Kristian K Ullrich
Examples
1
2
3
## load example sequence data
data("hiv", package="distSTRING")
rcpp_distSTRING(dnavector=as.character(hiv), scoreMatrix=iupacMatrix())
kullrich/distSTRING documentation built on Dec. 21, 2021, 8:42 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
calcualtes pairwise distances using a score matrix
Usage
1 | rcpp_distSTRING(dnavector, scoreMatrix, ncores = 1L)
|
Arguments
dnavector |
StringVector |
scoreMatrix |
NumericMatrix |
ncores |
number of cores |
Value
list
Author(s)
Kristian K Ullrich
Examples
1 2 3 | ## load example sequence data
data("hiv", package="distSTRING")
rcpp_distSTRING(dnavector=as.character(hiv), scoreMatrix=iupacMatrix())
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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