hiv-data: hiv-data

In kullrich/distSTRING: distSTRING calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis

Description

Example cds sequences from HIV-1 sample 136 patient 1 from Sweden envelope glycoprotein (env) gene, V3 region as DNAStringSet.

Usage

data(hiv)

Format

an object of class DNAStringSet see XStringSet-class

References

Yang et al. (2000) Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics. 155(1), 431-449.

Examples

data("hiv", package="distSTRING")

kullrich/distSTRING documentation built on Dec. 21, 2021, 8:42 a.m.