tests/testthat/test-aastring2dist.R
In kullrich/distSTRING: distSTRING calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
data(hiv)
test_that("aastring2dist()", {
h <- hiv |> cds2aa() |> aastring2dist(score=granthamMatrix())
expect_true(h$sitesUsed[1,1] == 91)
h <- hiv |> cds2aa() |> aastring2dist(score=granthamMatrix(), threads=2)
expect_true(h$sitesUsed[1,1] == 91)
})
kullrich/distSTRING documentation built on Dec. 21, 2021, 8:42 a.m.
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data(hiv)
test_that("aastring2dist()", {
h <- hiv |> cds2aa() |> aastring2dist(score=granthamMatrix())
expect_true(h$sitesUsed[1,1] == 91)
h <- hiv |> cds2aa() |> aastring2dist(score=granthamMatrix(), threads=2)
expect_true(h$sitesUsed[1,1] == 91)
})
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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