exonCompatible: Compatible fragment counts for exons

Description Usage Arguments Value Author(s)

View source: R/overlaps.R

Description

Identify fragments compatible with exons.

Usage

1
2
exonCompatible(exons, spliceL, spliceR, frag_exonic, frag_intron,
  counts = TRUE)

Arguments

exons

IRanges of exons

spliceL

Logical vector indicating whether LHS boundary is spliced

spliceR

Logical vector indicating whether RHS boundary is spliced

frag_exonic

IRangesList of exonic regions, one entry per fragment

frag_intron

IRangesList of introns, one entry per fragment

counts

Logical indicating whether counts or indices of compatible fragments should be returned

Value

Counts or list of indices of compatible fragments

Author(s)

Leonard Goldstein


ldg21/SGSeq documentation built on May 7, 2019, 9:37 a.m.